During the summer of 2014, a field survey was conducted in several littoral rocky sites on the southeastern coast of Spain. In this area, dense canopies of Cystoseira mediterranea characterize undisturbed locations and cover most of the available infralittoral fringe. Turfs composed mainly of the coralline algae Ellisolandia elongata replace the canopy in locations where some kind of anthropogenic disturbance has occurred. The main goal of this study was to compare the polychaete fauna dwelling within the two types of phytal substratum, and several univariate and multivariate analyses were performed to detect significant differences between the two assemblages. The analyses showed that the assemblage inhabiting E. elongata was characterized by a higher population density of polychaetes and was dominated by herbivores and filter-feeders, especially Fabricia stellaris and Amphiglena mediterranea. Polychaetes were less abundant in pristine sites covered by Cystoseira mediterranea, although a-diversity was slightly higher. This assemblage was characterized by a predominance of omnivores followed by herbivores, and by high relative abundances of Syllis prolifera and Salvatoria clavata. However, none of the detected differences was statistically significant and site to site comparison showed that differences between locations with the same phytal cover were similarly deep. Our data point out that the assemblage inhabiting turf algae in the region studied is not substantially different to that found in pristine areas and that this type of phytal covering can act as effective refuge for polychaetes under moderately disturbed condition.